miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159783492|gb|EG399628.1|EG399628 CGATTTTTCCTTTTTTTTTTTGAATTGTGATCCCATGCTTTATTAATGGCACATCTTAGATATATATGGAACATACTAGC
TCTGTAAACAAATATAACAAGTTTTAGGTCACTACTTTAATGACCTAAAACGTCCTATATTTATTTACAGAGGGAGTACA
CAACTATCTCAGCGATGGTAACACACCCATGAGAGTTGTGTAACAAATAGTGCAACAATACATTCAAAGATAGTTGTTAT
TTAGCTGGTTGGATGTAACTCAATTCTCACGCCAGATACTTGAGCACGCCAGGAAAGTGAACCATGTAGAAATAGTCGTC
CCAGTCGATTTTCTTGGGATCGAAATCAAAGTAGTATTCTCCTCCATCACTATTTTGCTCCATCGCCTTCCTTAGCTTCT
CAAGGTTCATGTCATCAAAGCGCCCTTTGAATAAGGTGTAAGGTGCATAGAGCTCGATCAGATGCATGGCCAGTCTGTAT
TTTCCGCTGAGCTCATTGTAGCGCCGCGAGAAAACACCACATAGCACTACGTTCACCAGATGAAGGATCTCAAGAGGGAG
CTTGTACTTGATGATCATGTAAGTGCGGAGCTTGGCAACCGTGCTGAAGAAGCGCATCTTGTTCAGCCGGATGGGCTTGC
CGTTCTCCCCTCGCGGCGGATTGTCCACGAAGTAGCGGTGGGCCGACTCCCGGAGAGTCATGTAGGACGCCGGGTTGCTC
ATGGACGACGTCACGTGGTNNNTGGTCTGCGTTTGTTCC




Most similar to sp|Q39152|FACR1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q39152|FACR1_ARATH Fatty acyl-CoA reductase 1 OS=Arabidopsis
           thaliana GN=FAR1 PE=2 SV=1
          Length = 491

 Score =  144 bits (364), Expect = 5e-34
 Identities = 71/159 (44%), Positives = 97/159 (61%)
 Frame = -2

Query: 749 QTXXHVTSSMSNPASYMTLRESAHRYFVDNPPRGENGKPIRLNKMRFFSTVAKLRTYMII 570
           Q   HV SS  NP ++  L +   RYF   P  G NG PI + K    ST+A+   YM +
Sbjct: 330 QAIYHVGSSCKNPVTFGQLHDFTARYFAKRPLIGRNGSPIIVVKGTILSTMAQFSLYMTL 389

Query: 569 KYKLPLEILHLVNVVLCGVFSRRYNELSGKYRLAMHLIELYAPYTLFKGRFDDMNLEKLR 390
           +YKLPL+IL L+N+V        Y++LS K +LAM L+ELY PY LFKG FDD+N E+LR
Sbjct: 390 RYKLPLQILRLINIVYPWSHGDNYSDLSRKIKLAMRLVELYQPYLLFKGIFDDLNTERLR 449

Query: 389 KAMEQNSDGGEYYFDFDPKKIDWDDYFYMVHFPGVLKYL 273
              ++N    +  F+FDPK IDWD+Y    H PG++ ++
Sbjct: 450 MKRKENIKELDGSFEFDPKSIDWDNYITNTHIPGLITHV 488